quick start

prepare GSEA input files in one step

make_gsea_input()

prepare GSEA input files from GSE raw data

expression data

read/write expression data .txt file, see also rGEO::read_gse_matrix()

read_txt()

read .txt file info a matrix

write_txt()

write GSEA expression dataset input file

chip annotation

read/write chip annotation .chip file, see also rGEO::read_gse_matrix()

read_chip()

read .chip file info a chip

write_chip()

write GSEA microarray chip annotation input file

phenotype data

make phenotype data .cls file

make_phenotype()

make phenotype tibble for write_cls

write_cls()

write GSEA phenotype data input file