ftp path to GEO raw data file

Source: R/ftp.R

gpl_soft_ftp() for GPL SOFT file, gse_soft_ftp() for GSE SOFT file, gse_matrix_ftp() for GSE matrix file

gpl_soft_ftp(accession)

gse_soft_ftp(accession)

gse_matrix_ftp(accession)

Arguments

accession

character. like 'GPL6947', 'GSE19161'

Value

character. ftp path to file

Examples

gpl_soft_ftp('GPL6947')
#> [1] "ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL6nnn/GPL6947/soft/GPL6947_family.soft.gz"

gse_soft_ftp('GSE19161')
#> [1] "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19161/soft/GSE19161_family.soft.gz"

gse_matrix_ftp('GSE19161')
#> [1] "ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19161/matrix/GSE19161_series_matrix.txt.gz"