ftp path

ftp path to GEO raw data

gds_ftp() gse_ftp() gpl_ftp()

ftp path to the directory of GEO accession (GDS, GSE or GPL)

gpl_soft_ftp() gse_soft_ftp() gse_matrix_ftp()

ftp path to GEO raw data file

read raw data

read GSE series matrix file (contains expression data) and SOFT file (contains platform annotation)

read_gse_matrix()

read GSE series matrix file (contains expression data)

read_gse_soft()

read GSE SOFT file (contains platform annotation)

parse_gse_soft()

parse GSE SOFT file (contains platform annotation)